Start Annotation Import Job

omics_start_annotation_import_job

R Documentation

Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers

Description

Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see Amazon Web Services HealthOmics variant store and annotation store availability change.

Starts an annotation import job.

Usage

omics_start_annotation_import_job(destinationName, roleArn, items,
  versionName, formatOptions, runLeftNormalization, annotationFields)

Arguments

destinationName	[required] A destination annotation store for the job.
roleArn	[required] A service role for the job.
items	[required] Items to import.
versionName	The name of the annotation store version.
formatOptions	Formatting options for the annotation file.
runLeftNormalization	The job's left normalization setting.
annotationFields	The annotation schema generated by the parsed annotation data.

Value

A list with the following syntax:

list(
  jobId = "string"
)

Request syntax

svc$start_annotation_import_job(
  destinationName = "string",
  roleArn = "string",
  items = list(
    list(
      source = "string"
    )
  ),
  versionName = "string",
  formatOptions = list(
    tsvOptions = list(
      readOptions = list(
        sep = "string",
        encoding = "string",
        quote = "string",
        quoteAll = TRUE|FALSE,
        escape = "string",
        escapeQuotes = TRUE|FALSE,
        comment = "string",
        header = TRUE|FALSE,
        lineSep = "string"
      )
    ),
    vcfOptions = list(
      ignoreQualField = TRUE|FALSE,
      ignoreFilterField = TRUE|FALSE
    )
  ),
  runLeftNormalization = TRUE|FALSE,
  annotationFields = list(
    "string"
  )
)