Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers¶

Description¶

Amazon Web Services HealthOmics variant stores and annotation stores are no longer open to new customers. Existing customers can continue to use the service as normal. For more information, see Amazon Web Services HealthOmics variant store and annotation store availability change.

Starts an annotation import job.

Usage¶

omics_start_annotation_import_job(destinationName, roleArn, items,
  versionName, formatOptions, runLeftNormalization, annotationFields)

Arguments¶

destinationName

[required] A destination annotation store for the job.
roleArn

[required] A service role for the job.
items

[required] Items to import.
versionName

The name of the annotation store version.
formatOptions

Formatting options for the annotation file.
runLeftNormalization

The job's left normalization setting.
annotationFields

The annotation schema generated by the parsed annotation data.

Value¶

A list with the following syntax:

list(
  jobId = "string"
)

Request syntax¶

svc$start_annotation_import_job(
  destinationName = "string",
  roleArn = "string",
  items = list(
    list(
      source = "string"
    )
  ),
  versionName = "string",
  formatOptions = list(
    tsvOptions = list(
      readOptions = list(
        sep = "string",
        encoding = "string",
        quote = "string",
        quoteAll = TRUE|FALSE,
        escape = "string",
        escapeQuotes = TRUE|FALSE,
        comment = "string",
        header = TRUE|FALSE,
        lineSep = "string"
      )
    ),
    vcfOptions = list(
      ignoreQualField = TRUE|FALSE,
      ignoreFilterField = TRUE|FALSE
    )
  ),
  runLeftNormalization = TRUE|FALSE,
  annotationFields = list(
    "string"
  )
)